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[Virtual Physics]

number 03.             May 25, 1996

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a forum for virtual meetings of scientists and students involved in a research activity on:
THE SOLID STATE PHYSICS AND SUPERCONDUCTIVITY

Editors: Dr. Zbigniew J.Koziol, (Editor-in-Chief) webex@ra.isisnet.com, WebExperts Inc.
Dr. Michal Spalinski, Michal.Spalinski@fuw.edu.pl, Institute of Theoretical Physics, Warsaw University
Copyright (C) 1996 by Zbigniew Koziol.
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IN THIS ISSUE:

LETTER FROM THE EDITOR
PHYSICISTS AND THE REAL WORLD, by Lukasz Turski
THE LINUX/GNU OPERATING SYSTEM - A PHYSICIST'S PERSPECTIVE,
by Michal Spalinski
NEW RELEASE WEB SERVICE: "One-Shot World-Wide Preprints Search",
by Enrique Canessa, Trieste

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LETTER FROM THE EDITOR

Dear Readers of Virtual Physics,

I have more and more satisfaction by doing my job. The distribution list contains already about 1000 e-mail addresses. I wish to welcome all new readers with a hope that they will become interested in receiving next issues of Virtual Physics as well. I invite all of you for a closer participation in the editorial work.

The special reason of my satisfaction is that Michal Spalinski has joined the Editorial board of Virtual Physics. Dr. Michal Spalinski has a position of assistant professor at the Institute for Theoretical Physics of Warsaw University. I welcome his help with enthusiasm. Please have an interesting reading of Michal's article introducing to the Linux operating system. We believe that this subject will be discussed in Virtual Physics many times yet.

This issue contains one more contribution from Poland. I would like to thank the Editors of Delta for permission of reprinting a valuable letter by Professor Lukasz Turski from Polish Academy of Sciences. This is one more voice treating about the current status of science, and physics in particular, in our culture.

I do encourage you to visit the web pages of Virtual Physics. Most of the materials available will is published by using both methods, e-mail and www. However, our web pages will be updated more frequently, and you will have a chance to find around other information related to superconductivity, as well. In particular, I would like to remind you that some announcements about new jobs have been placed already at the Virtual Board. This service can be used also by students and scientists searching opportunities in physics.

We are kindly asking for support, comments, criticism, for contributing materials, and for your active participation in this project.

Sincerely yours,
Zbigniew Koziol

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PHYSICISTS AND THE REAL WORLD
by Lukasz Turski

Centre for Theoretical Physics
Polish Academy of Sciences

First published in Delta, 1996.

(WWW links have been introduced by the Editor of Virtual Physics)

The Editors of Delta have been kind enough to invite me to take part in the discussion they have organize to celebrate their 250th issue. I have been asked to answer one of the seven questions. The choice of questions reflects a deeply pessimistic opinion of the Editors as to the state of science, and physics in particular, in the present world. When reading scientific literature one may end up with a feeling that this opinion is shared by many scientists. If this is so, then one more question should be added to the list. The question is the following: if all the things you are concerned about are true, then how did it happen that science, physics included, has found itself at the end of the 20th century in a state of social alienation, while a hundred years ago it was regarded as respectful and trustworthy? I shall try to answer this very question.

The answer is very bitter, perhaps too bitter for many my colleagues to take it without anaesthesia. The science of the end of the 20th century and physics in particular, is now suffering the consequences of departing from one of the fundamental principles, which is the obligation to speak truth and not to give false testimony to untruth. Being unfaithful to our doctoral oath we have offered the masters of this world access to our knowledge and to our skills, getting in reward miserable pennies (particularly miserable in the times of real socialism in Poland and also miserable in the II Republic, even though now the penny has become `hard currency') and vain glory. Even now, when the political structure of the world has undergone considerable changes - temporarily or not - I have been observing with disgust a display of hypocrisy which accompanied the struggle for the construction of a supercollider.

Among basic sciences physics occupies a distinguished position. It is the first and, up to now, the only scientific discipline which has been able to amalgamate both quantitative and qualitative research methods into one coherent cognitive tool. This does not mean, however, that other disciplines are `worse'. More and more of them, traditionally called `the humanities', follow the example of physics and turn to qualitative methods, too. At the present stage of development these sciences are regarded by many as more `important' than physics. This point is quite well illustrated by the case of contemporary economic and management sciences. None of the two would survive without mathematical methods, many of them created to meet the needs of physics and by physicists.

Why then has physics lost so much in the eyes of an `average' citizen? I believe this is due to three reasons. The first of them, of a very global character and applicable to many other scientific disciplines, I have mentioned at the beginning. A specific `sin' of physics was a dishonest presentation of safety issues relative to the exploitation of nuclear energy. This is why people gave faith to histerical protests and scared by the Chernobyl disaster (which was primarily due to human incompetence) - rejected the use of nuclear energy. We have missed the time when we could have educated our co-citizens sufficiently as not to consider nuclear science as some kind of esoteric knowledge on the sinister powers of darkness. This intellectual superstition is supported by questions like the one on the creations of the human mind, which elementary particles and fields are supposed to be. I deeply hope that none of the Editors does not seriously consider the electrons which carry the text of this article over a telecommunication cable to be a creation of the human mind (even though the contents of the article - the information contained in the electronic beam - is a creation of MY mind).

The second reason is that scientists, and physicists in particular, have lost a clear sight of the motivation for doing research.We come to know the world which surrounds us, because - as George Mallory, the moral conqueror of Mount Everest, has put it - it exists. But then we have to transmit the acquired knowledge to others. Hence we must teach, teach and teach again. We must teach wisely and well. At each step we must show the benefits brought to humanity by the progress of science - and indeed these benefits have been numerous. (In fact, cosmic flights have probably been less beneficial in this respect than other achievements.) They must be presented cleverly, for even an `uneducated' person possesses nowadays an important practical knowledge. Who, if not us, is going to tell him that the foil used to save lives of shocked victims of car accidents as well as the waterproof material used for making thin mattresses for sleeping in tents are byproducts of cosmic projects. If we do not tell him that, he will see no reason to care for the whole cosmic game.

Finally, the third reason is the feeling of superiority characteristic of many physicists, which leads many of us to remain in the state of splendid isolation. The tax payers are expected to pay for our research, but we have no obligation to teach them nor to help them understand what is going on around them, nor even to tell them the truth about parascience. How many physicists would dare to stand face to face against a sorcerer, a fortune-teller or a charlatan? Not many, I am afraid, whereas it is not so very difficult to convince people that parascience, contrary to what the last question suggests, is not taking the lead over science. There is no reason for not telling people that a well-known healer and hypnotist turned to a hospital for help when he injured himself with a circular saw - instead of trying to cure his wounds by conjurations. It is just a question of will.

I am an optimist, nothing is lost yet, much work has to be done with respect to new generations so as to make the Editor's questions sound senseless for them. I believe that if you keep the standard of Delta high, you will see that the condition of science will change for the better at the turn of the century.

Lukasz Turski
Centre for Theoretical Physics
Polish Academy of Sciences

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The Linux/GNU Operating System
- A Physicist's Perspective
by Michal Spalinski

received May 25, 1996

Institute of Theoretical Physics
Warsaw University, Hoza 69, 00-681 Warsaw, Poland

Content

Introduction
Freely available software
Commercial software
Availability
Web resources
Linux User Groups

Introduction

Linux is a high quality, robust operating system of the Unix family. It is freely available, and runs on personal computers based on the Intel 386/486/Pentium processors. It is developed by a large group of programmers scattered around the world, working under the coordination of Linus Torvalds. Strictly speaking, this group of people is responsible for developing the system kernel, while the remaining software which is necessary for the kernel to be useful is the work of numerous individuals working on the GNU project under the auspices of the Free Software Foundation. Together, the kernel and the supporting software, form a Linux/GNU distribution. These distributions are available freely (in particular, free of charge) by ftp from many repositories all over the world. There are also commercial companies which distribute the same thing on CD ROM. For users which require it, there are commercial companies which provide support for Linux, which is a service that has to be paid for. However the operating system itself and the immense amount of supporting and application software is available for free.

Linux makes it possible to turn even cheap, old 386 machines with as little as 4MB RAM and an 80 MB hard disk into workstation - style user environments. The performance of a PC running Linux is significantly higher than that of the same PC under DOS (not to mention MS Windows), so even a 386 SX is quite usable running X and standard software. This way one can have the same working environment on a laptop/notebook PC, or on a PC at home as on a UNIX workstation at the office. Indeed, in cases when a workstation is not available, but a PC is, it makes little sense not to turn it into a workstation running Linux, especially since there is no problem with keeping DOS/Widows on another disk partition and choosing the operating system at boot time. In the case of a networking environment one can even boot Linux from a floppy disk and use the PC as an X-terminal.

The fact that with Linux essentially any PC in use today can be turned into a Unix workstation has great educational importance: those who are interested in gaining a "hands on" knowledge of Unix can administrate their own Unix machine. It gives access to standard Unix software, usually only found on workstations, to any student with a PC.

Although the main interest for most people at the moment is in Linux running on Intel CPUs, ports of Linux to the DEC Alpha, Power PC and Sun Sparc are well under way. This, as well as recent Posix certification is responsible for the growing use of Linux outside academia, in business and industrial environments.

An important factor which accounts for the expansion of Linux is the superiority of Unix in the network environment. As the Internet becomes ubiquitous, so does Unix, as a secure and robust platform for Internet and Web development. The ease with which one can set up WWW servers, search engines and database interfaces on Unix platforms also contributes to the growing popularity of Linux.

Freely Available Software

Most of the software normally found on workstations at Physics Departments around the World is freely available, and is usually a part of a Linux/GNU distribution. The majority of this software comes from the GNU Project, but lots of specialized software is written at various academic and research institutions (eg. the numerical analysis laboratory Yorick, written at Lawrence Livermore National Laboratory, or Octave, a Matlab style program written at the University of Wisconsin), and is also freely available, at least for academic purposes.

Some common examples of the available software are:

  • Editors
    • Emacs
    • Vi
    • Joe
    • Nedit
    • Tkedit
  • Text processing
    • TeX/LaTeX with all existing macro packages
    • Groff
  • Plotting Tools
    • Gnuplot
    • Gle
    • Xmgr
  • Programming languages
    • C (GNU)
    • C++ (GNU)
    • Fortran (GNU, f2c)
    • Modula 2 (Mocka, GP)
    • Modula 3 (DEC SRC)
    • Lisp (GNU, CLISP, XLISP)
    • Scheme (MIT, SCM, Gambit, ...)
    • and many others.
  • Numerical Analysis Tools
    • Yorick (a high performance package for numerical calculations, plotting and animation).
    • Octave (a Matlab style package)
    • Scilab
    • Matlab (a rather old version - newer versions are commercial).
  • Numerical Analysis Libraries: all the packages in Netlib (LINPACK, LAPACK, EISPACK etc are usable under linux with the f2c package).
  • Symbolic manipulation systems
    • Mupad
    • Maxima
    • Form
  • Web browsers
    • Nestcape
    • Mosaic
    • Arena
    • Chimera
There is an index of software packages that have been tested on Linux. This huge list of packages is however not exhaustive, because essentially all software which is distributed on the Internet in source form can be compiled on Linux.

There are also various lists of software of special interest to the scientific community:

Most of this software can also be compiled and used on other flavours of Unix, so one is normally not tied to Linux in any way: a numerical analysis program can be developed alternately on a notebook or home computer running Linux and a workstation at the office - using the same library packages, or graphical tools. This is a situation much different from using a Unix workstation at the office and a DOS/Windows notebook or PC elsewhere.
Most of this software is available already compiled (i.e. in the form of executable, binary packages) as part of standard Linux/GNU distributions, or can be downloaded from Linux/GNU software repositories. Source code (usually in C) is normally also available.

Commercial Software for Linux

There is a quickly growing number of well known commercial packages running on other operating platforms which are being ported to Linux. At the moment the following are already available:
This is list is by no means exhaustive - it only reflects what the author is presently aware of.

Availability

There are three common ways to obtain a Linux distribution and install it:
  • Buy a CD ROM with a complete distribution.
  • Boot a bare-bones Linux off a floppy disk and install the full distribution on the hard disk via NFS (for this one must have a PC connected to the Internet).
  • Download a complete distribution by ftp, copy it onto floppy disks, and install from the floppies (this requires 10 - 50 floppy disks, depending on what one wants to install).
When buying a CD with Linux it is important to avoid buying very old versions (very old here means summer '95 or earlier). The thing to watch for is that the distribution should be an ELF distribution: this is a new binary standard which came into general use in mid-95.

Detailed installation instructions for the various distributions can be found on the home pages of the various distribution maintainers:

There is extensive Linux documentation at the Linux Documentation Project Home Page.

Web resources

There is a great number of Linux-related Web sites: it would make little sense trying to list them here: below is a list of selected starting points for further exploration of the Linux World:

Linux User Groups

There are Linux User Groups all over the world. Participating in the activities of these groups makes it easier to keep up with the new software packages and updates that are appearing each week. Such groups also make it easier to find people who can help with specific problems that one might encounter using a new operating system.

Maybe there is one near you?


Michal Spalinski
Institute of Theoretical Physics
Warsaw University, Warsaw, Poland

Copyright 1996, Michal Spalinski.

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NEW RELEASE Web service:

"One-Shot World-Wide Preprints Search"
Release May 2, 1996
by Enrique Canessa, Trieste
This is a free prototype service for a global lookup search thoughout ALL on-line scientific preprints repositories in the world.

The searching is now as easy as a mouse click!!!

By using the new "One-Shot World-Wide Preprints Search" you need no longer connect your WWW browser to each different preprints repository every time you want to search for a Title/Author.

Simply point your browser to:

http://www.ictp.trieste.it/indexes/preprints.html

Best of all, this prototype multiplies the power of available search engines, like the one at CERN, by casting the widest possible information "in un solo colpo" (in one hit). It's like having a personal assistant who will do the multiple search for you, bringing back the information you require from the list containing ("clickable") links to the sources.

In one-shot, the following repositories are presently searchable:

 

           ICTP:        In-house Preprints and Preprints Archive List

           LANL:        Physics Preprints 

           SISSA:       European Mirror of LANL 

           CERN:        In-house and Scanned Preprints

           SLAC-SPIRES: High Energy Preprints Database

           MathSearch:  Mathematics and Statistics Archives

           WPA:         Working Papers Archive in Econom



                                      ... plus others. 

Enrique Canessa
canessae@ictp.trieste.it
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Virtual Physics: a forum for virtual meetings of scientists and students involved in a research activity on THE SOLID STATE PHYSICS AND SUPERCONDUCTIVITY is available for a free subscription in an e-mail version. To subscribe: send a request to the Editor.

Editors:

Dr. Zbigniew J. Koziol (Editor-in-Chief), WebEx@ra.isisnet.com, WebExperts Inc.,
2-6032 Compton Ave., Halifax, Nova Scotia, B3H 1E7 Canada, tel. (902) 423 2149
Dr. Michal Spalinski, Michal.Spalinski@fuw.edu.pl, Institute of Theoretical Physics,
Warsaw University, Hoza 69, 00-681 Warsaw, Poland, tel. (+48)(2) 628 3031
Virtual Physics URL address: http://www.isisnet.com/MAX/vp.html
To subscribe a F R E E e-mail version or submit materials for publication, write to the Editor.
Copyright (C) 1996 by Zbigniew Koziol.
this copyright notice concerns the whole of the Virtual Physics edition but not specific articles published there which are property of their respective copyright holders
No responsibility is assumed by the publisher for any damage to persons or property as a matter of the product liability, negligence or otherwise, or from any use of methods, instructions or ideas contained in the material herein. The opinions expressed in this publication do not necessarily reflect the opinions of the Editor and certainly they have nothing to do with WebEperts Inc.
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